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Related data information for Arabidopsis Phenome Database

Projects > シロイヌナズナフェノームデータベース > related information

1. Ontologies:

Ontology Covered field Example Reference
Plant Ontology (PO) organ flower Cooper et al. 2013
developmental stage flowering
Plant Trait Ontology (TO) developmental stage flowering time Jaiswal et al. 2002
The ontology of phenotypic qualities (PATO) physical quality increased length Mungall et al. 2010
Gene Ontology (GO) biological process nitrogen fixation Ashburner et al. 2000
cellular component chloroplast
molecular function glycerate kinase activity
Plant Environment Ontology (EO) environmental condition long day length regimen Jaiswal et al. 2002
Chemical Entities of Biological Interest (ChEBI) chemical compound sugar Hastings et al. 2013

2. RIKEN Arabidopsis mutants

Project # of mutants Reference
RIKEN Activation tagging line 469 Nakazawa et al. 2003
RIKEN Arabidopsis Fox-hunting 14125 Kondou et al. 2010
RIKEN Ds transposon line 22211 Sakurai et al. 2005

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